From: Rheumatoid arthritis, item response theory, Blom transformation, and mixed models
Anti-CCP Blom-transformed | IRT latent variable | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
No. | SNP | p-value | Additive effect | STD | bp | SNP | p-value | Additive effect | STD | bp |
1 | rs189512 | 0.00067 | -0.14680 | 0.04294 | 6923632 | rs2876143 | 0.00816 | 0.07944 | 0.02993 | 8928623 |
2 | rs214527 | 0.01890 | -0.11800 | 0.05014 | 18399329 | rs1863995 | 0.04430 | -0.05370 | 0.02665 | 13565596 |
3 | rs1402405 | 0.02528 | 0.08417 | 0.03755 | 24198476 | rs736794 | 0.04758 | -0.04813 | 0.02425 | 41044688 |
4 | rs1224485 | 0.02145 | 0.08928 | 0.03874 | 37043628 | rs1009130 | 0.00301 | 0.08090 | 0.02716 | 58068726 |
5 | rs1738240 | 0.01339 | 0.10040 | 0.04051 | 38810588 | rs977382 | 0.02981 | 0.06241 | 0.02866 | 62057200 |
6 | rs533393 | 0.00897 | -0.10350 | 0.03951 | 81645240 | rs1040802 | 0.01273 | -0.06005 | 0.02403 | 63469278 |
7 | rs1180237 | 0.01758 | 0.09720 | 0.04085 | 83939524 | rs2076874 | 0.00397 | 0.06580 | 0.02276 | 64150527 |
8 | rs910563 b | 0.01025 | 0.10250 | 0.03983 | 88054481 | rs1630182 | 0.02261 | -0.05252 | 0.02298 | 64205048 |
9 | rs1051131 | 0.04853 | 0.07951 | 0.04024 | 88217142 | rs1370436 | 0.03343 | 0.05014 | 0.02352 | 74520012 |
10 | rs2144363 | 0.02680 | 0.19480 | 0.08778 | 92037502 | rs910563 | 0.03853 | 0.04794 | 0.02312 | 88054481 |
11 | rs6454855 | 0.04535 | 0.07830 | 0.03906 | 92071536 | rs2610715 | 0.01464 | -0.05937 | 0.02425 | 89260502 |
12 | rs716192 | 0.04829 | -0.08171 | 0.04131 | 96557287 | rs240153 | 0.04093 | -0.04727 | 0.02307 | 101112733 |
13 | rs1321807 | 0.02545 | 0.08678 | 0.03876 | 117730562 | rs239229 | 0.02728 | -0.05129 | 0.02318 | 101151573 |
14 | rs941815 | 0.04541 | -0.08273 | 0.04128 | 123901148 | rs239189 | 0.03231 | 0.04970 | 0.02317 | 101174385 |
15 | rs839556 | 0.04100 | 0.08086 | 0.03950 | 142852448 | rs1158747 | 0.03314 | -0.05161 | 0.02417 | 112546220 |
16 | rs923459 | 0.00991 | 0.10150 | 0.03927 | 159471138 | rs763075 | 0.00505 | 0.06554 | 0.02330 | 122192096 |
17 | rs294882 | 0.02322 | -0.09232 | 0.04059 | 159512287 | rs1033540 | 0.04603 | -0.04924 | 0.02463 | 131717872 |
18 | rs225604 | 0.00643 | 0.06488 | 0.02373 | 142433136 | |||||
19 | rs1931992 | 0.00209 | 0.07516 | 0.02433 | 142581777 | |||||
20 | rs2151913 | 0.03291 | -0.05082 | 0.02377 | 150161633 | |||||
21 | rs718527 | 0.01903 | -0.05770 | 0.02454 | 152501127 | |||||
22 | rs231958 | 0.01449 | 0.06105 | 0.02490 | 155786394 | |||||
23 | rs923459 | 0.01838 | 0.05568 | 0.02356 | 159471138 | |||||
24 | rs409359 | 0.04983 | -0.04526 | 0.02303 | 159854284 | |||||
25 | rs916331 | 0.01358 | 0.05892 | 0.02380 | 167379847 |