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Table 1 Regions screened with 100 replicates

From: Mapping a gene for rheumatoid arthritis on chromosome 18q21

Region

No. SNPs

First kb

Last kb

χ 1 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaiiGacqWFhpWydaqhaaWcbaGaeGymaedabaGaeGOmaidaaaaa@3079@ for msSNP

Composite likelihood

     

χ 1 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaiiGacqWFhpWydaqhaaWcbaGaeGymaedabaGaeGOmaidaaaaa@3079@

LOD1

p-Values

1

256

48896

49928

6.58

0.05948

0.01291

0.80701

2

238

49935

51009

11.18

0.00691

0.00150

0.93358

3

197

51010

51919

10.83

2.22538

0.48323

0.13584

4

132

51926

52398

4.42

0.05000

0.01086

0.82274

5

241

52398

53262

5.90

0.00011

0.00002

0.99158

6

113

53262

53596

12.25

6.22830

1.35246

0.01259

7

74

53599

53919

6.84

2.95054

0.64070

0.08592

8

38

53920

54006

1.75

0.78229

0.16987

0.37637

9

103

54008

54448

6.64

1.71241

0.37185

0.19074

10

49

54496

54974

5.23

0.50780

0.11027

0.47592

11

70

54977

55285

12.06

0.34910

0.07581

0.55438

12

60

55286

55381

10.89

0.00011

0.00002

0.99147

13

89

55382

55634

4.24

0.13215

0.02870

0.71588

14

29

55641

55838

2.42

0.05010

0.01088

0.82258

15

134

55839

56399

5.66

0.97584

0.21190

0.32321

16

209

56408

57248

3.87

0.00166

0.00036

0.96744

17

55

57253

57545

9.51

1.51557

0.32910

0.21834

18

200

57548

58415

3.86

1.58390

0.34394

0.20826