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Table 2 Running time and error rates of PedPhase on chromosome 6

From: Comparison of haplotyping methods using families and unrelated individuals on simulated rheumatoid arthritis data

   

Error rate

Individuals

Missing

Running time (sec)

Genotype inference

Heterozygous switch

Point-wise

100

0.00

10

------a

0.0061

0.0011

100

0.05

11

0.1165

0.0215

0.0088

100

0.10

15

0.1439

0.0412

0.0190

100

0.15

16

0.1731

0.560

0.0279

200

0.00

24

------

0.0058

0.0022

200

0.05

25

0.1223

0.0231

0.0099

200

0.10

27

0.1291

0.0398

0.0181

200

0.15

35

0.1513

0.0517

0.0256

400

0.00

51

------

0.0056

0.0015

400

0.05

55

0.1240

0.0232

0.0094

400

0.10

61

0.1418

0.0353

0.0179

400

0.15

66

0.1628

0.0459

0.0238

  1. a------, Inference error rate is not measured because no missingness exists in this row.
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BMC Proceedings

ISSN: 1753-6561

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