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Table 1 Effect estimates of the selected variables

From: Picking single-nucleotide polymorphisms in forests

 

logRega

 

Variable

Coef

SE

nominal p

adjusted p

Simulated effects

DR allele from mother

1.476

0.114

<10-15

<10-13

 

DR allele from father

1.480

0.115

<10-15

<10-13

 

Chr 11 bp110, 204, 257

0.822

0.123

2.40 × 10-11

7.20 × 10-10

Locus F

Lifetime smoking

0.976

0.168

7.06 × 10-9

2.05 × 10-7

Smoking

Gender

0.804

0.169

2.14 × 10-6

5.99 × 10-5

Gender

Chr 6 bp 32, 521, 277

-0.861

0.201

1.87 × 10-5

0.0005

DR/Locus C

Chr 18 bp 66, 048, 927

0.333

0.133

0.0121

0.3146

Locus E

Chr 6 bp 36, 582, 440

0.634

0.255

0.0131

0.3275

Locus D

Chr 6 bp 28, 758, 332

0.248

0.125

0.0477

1.0000

 

Chr 1 bp 26, 043, 914

0.185

0.143

0.1942

1.0000

 

Chr 2 bp 34, 451, 973

0.154

0.126

0.2228

1.0000

 

Chr 6 bp 30, 266, 243

-0.184

0.165

0.2647

1.0000

 

Chr 7 bp 97, 632, 608

0.116

0.125

0.3522

1.0000

 

Chr 6 bp 26, 075, 047

-0.126

0.138

0.3613

1.0000

 

Chr 18 bp 10, 152, 707

0.098

0.115

0.3907

1.0000

 

Chr 8 bp 127, 252, 736

-0.101

0.121

0.4050

1.0000

 

Chr 13 bp 45, 600, 085

-0.212

0.258

0.4094

1.0000

 

Chr 13 bp 31, 890, 164

0.090

0.116

0.4356

1.0000

 

Chr 11 bp 22, 794, 066

0.118

0.155

0.4475

1.0000

 

Chr 5 bp 57, 110, 585

-0.251

0.337

0.4559

1.0000

 

Chr 6 bp 32, 772, 203

0.094

0.133

0.4769

1.0000

 

Chr 4 bp 15, 714, 556

0.066

0.112

0.5547

1.0000

 

Chr 6 bp 133, 756, 692

0.072

0.133

0.5885

1.0000

 

Chr 14 bp 37, 328, 424

0.073

0.142

0.6051

1.0000

 

Chr 1 bp 48, 687, 156

-0.192

0.378

0.6115

1.0000

 

Chr 15 bp 77, 852, 281

0.097

0.195

0.6170

1.0000

 

Chr 10 bp 10, 764, 908

0.050

0.133

0.7034

1.0000

 

Chr 15 bp 66, 671, 014

0.049

0.222

0.8235

1.0000

 

Chr 2 bp 17, 889, 207

0.059

0.269

0.8261

1.0000

 

Chr 6 bp 155, 580, 230

-0.020

0.131

0.8757

1.0000

 

Chr 7 bp 8, 524, 374

-0.009

0.116

0.9332

1.0000

 

Chr 2 bp 157, 502, 490

0.018

0.570

0.9744

1.0000

 

Intercept

-11.464

1.594

   
  1. alogReg, logistic regression; Coef, estimated regression coefficient; SE, standard error, nominal p, two-sided nominal p-value; adjusted p, two-sided p-value adjusted according to the Bonferroni-Holm procedure; chr, chromosome; bp, base pair.