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Table 3 p-Values of X-linked SNPs using PLINK allelic association test, GEE adjusted for sex assuming an additive model, and xMQLS, a two-degrees-of freedom test

From: Testing for genetic association taking into account phenotypic information of relatives

SNP

PLINKa

GEE

xMQLS

RS1025952

1.50 × 10-3

1.33 × 10-4

6.05 × 10-7

RS4557887

1.58 × 10-3

1.38 × 10-4

6.16 × 10-7

RS12688703

1.16 × 10-3

1.47 × 10-4

8.99 × 10-7

RS41345546

8.76 × 10-4

9.34 × 10-4

4.36 × 10-6

RS12010049

4.84 × 10-3

3.15 × 10-4

7.73 × 10-6

RS5913038

1.87 × 10-3

5.66 × 10-4

9.20 × 10-6

RS5913060

2.22 × 10-3

5.90 × 10-4

9.34 × 10-6

RS5912337

2.16 × 10-3

5.83 × 10-4

9.41 × 10-6

RS17003827

2.32 × 10-3

6.13 × 10-4

9.44 × 10-6

RS1021570

2.56 × 10-3

6.38 × 10-4

1.01 × 10-5

  1. aStatistically inappropriate test.