| Number of SNPs | Number of Significant SNPs | ||||
---|---|---|---|---|---|---|
Methods | BIMBAM | IMPUTE | TUNA | BIMBAM | IMPUTE | TUNA |
Results before significant SNPs on chromosome 6 removed | ||||||
Typed | 499,102 | 515,049 | 499,084 | 469 | 364(428)a | 411(431)a |
Untyped | 2,052,389 | 2,030,768 | 236,672 | 2,025 | 1,230 | 139 |
Total | 2,551,491 | 2,545,817 | 735,756 | 2,494 | 1,594 | 550 |
Results after significant SNPs on chromosome 6 removed | ||||||
Typed | 465,977 | 480,591 | 465,961 | 44 | 55(79)a | 96(105)a |
Untyped | 1,902,577 | 1,882,164 | 217,913 | 201 | 43 | 16 |
Total | 2,368,554 | 2,362,755 | 683,874 | 245 | 98 | 112 |