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Table 1 The 14 measured genotypes results for HDL-C significant at a 1% FDR

From: Toward the identification of causal genes in complex diseases: a gene-centric joint test of significance combining genomic and transcriptomic data

Gene

Chromosome

Best SNP

χ2

Uncorrected p -value

Corrected p -value

Number of SNPs

Effective SNPs

CETP

16

rs3764261

159.09

<1.0 × 10-20

<1.0 × 10-20

25

20

HRNBP3

17

rs898533

1621.74

<1.0 × 10-20

<1.0 × 10-20

41

36

SMURF1

7

rs9297145

1599.57

<1.0 × 10-20

<1.0 × 10-20

20

12

KLHL6

3

rs12496193

1594.56

<1.0 × 10-20

<1.0 × 10-20

32

20

NLRC5

16

rs11508026

121.65

<1.0 × 10-20

<1.0 × 10-20

40

31

LPL

8

rs17410962

52.95

3.4 × 10-13

4.5 × 10-12

20

13

IQCG

3

rs11547008

46.68

8.4 × 10-12

5.9 × 10-11

12

7

ZNF613

19

rs4987042

42.82

6.0 × 10-11

4.8 × 10-10

13

8

RCAN2

6

rs1442219

33.60

6.8 × 10-9

8.1 × 10-8

26

12

CYP51A1

7

rs2229188

29.60

5.3 × 10-8

2.1 × 10-7

9

4

IL8

4

rs2886920

27.90

1.3 × 10-7

1.5 × 10-6

18

12

PACRG

6

rs13202088

27.56

1.5 × 10-7

1.0 × 10-5

127

69

CC2D2A

4

rs16892095

25.32

4.9 × 10-7

1.1 × 10-5

44

23

LYRM2

6

rs4707557

23.98

9.7 × 10-7

9.7 × 10-6

13

10