Table 1 Forward-stepwise selection in NARAC data with 27 GO biological processes
Pathway effect estimates for consecutive models obtained when adding terms as shown in column 1 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Modela | Deviance | AIC |
|
| Selected Model | ||||||||||
Intercept | -65279.5 | 0.001916 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | 0.16 | |
+GO:0009605 c | 4.27 | -65285.99 | 0.001915 | 0.017 | 0.017 | 0.017 | 0.018 | 0.018 | 0.017 | 0.017 | 0.018 | 0.021 | 0.022 | 0.018 | |
+GO:0006996 | 2.29 | -65288.57 | 0.001913 | -0.010 | -0.010 | -0.014 | -0.014 | -0.015 | -0.015 | -0.015 | -0.014 | -0.014 | -0.014 | ||
+GO:0006968 | 1.75 | -65290.08 | 0.001911 | -0.025 | -0.025 | -0.024 | -0.024 | -0.024 | -0.024 | -0.024 | -0.024 | -0.034 | |||
+GO:0030036 | 1.62 | -65291.31 | 0.001909 | 0.020 | 0.035 | 0.035 | 0.035 | 0.035 | 0.035 | 0.035 | 0.035 | ||||
+GO:0007015 | 3.07 | -65295.45 | 0.001907 | -0.055 | -0.055 | -0.055 | -0.055 | -0.055 | -0.055 | -0.055 | |||||
+GO:0006508 | 1.53 | -65296.50 | 0.001904 | 0.013 | 0.013 | 0.013 | 0.013 | 0.013 | 0.013 | ||||||
+GO:0009100 | 0.99 | -65296.47 | 0.001904 | 0.016 | 0.017 | 0.017 | 0.017 | 0.017 | |||||||
+GO:0006629 | 1.07 | -65296.61 | 0.001903 | -0.008 | -0.008 | -0.008 | -0.008 | ||||||||
+GO:0006950 | 0.46 | -65295.54 | 0.001902 | -0.005 | -0.005 | -0.007 | |||||||||
+GO:0009617 | 0.49 | -65294.52 | 0.001902 | -0.019 | -0.007 | ||||||||||
+GO:0006952 | 0.85 | -65294.23 | 0.001902 | 0.012 | |||||||||||
b
- aGO definitions: GO:0009605, response to external stimulus; GO:0006996, organelle organization and biogenesis; GO:0006968, cellular defense response; GO:0030036, actin cytoskeleton organization and biogenesis GO:0007015, actin filament organization; GO:0006508, proteolysis; GO:0009100, glycoprotein metabolic process; GO:0006629, lipid metabolic process.
- b
, the between-gene variance estimate - c Bold font indicates elements included in the selected model.