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Table 2 Summary of results for Q1

From: Gene-based partial least-squares approaches for detecting rare variant associations with complex traits

Gene

GBPLS1 SNPs

GBPLS2 SNPs

ARNT

C1S6533, C1S6542, C1S6561

C1S6533, C1S6540, C1S6542

ELAVL4

C13181

None

FLT1

C13S431, C13S522, C13S523, C13S524

C13S431, C13S522, C13S523, C13S524

FLT4

C5S5133, C5S5156

C5S5133

HIF1A

C14S1729, C14S1734

C14S1729, C14S1734

HIF3A

N/A

None

KDR

C4S1873, C4S1877, C4S1878, C4S1884, C4S1889

C4S1861, C4S1877, C4S1878, C4S1884, C4S1889

VEGFA

C6S2981

C6S2981

VEGFC

C4S4935

C4S4935

  1. Listed in the first column are the genes that are associated with Q1 in the simulation model. “N/A” means that the gene is not detected, and “None” means that none of the causal SNPs are detected even though the gene is detected by the corresponding method. The SNP names in bold are those with MAF = 0.000717.
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BMC Proceedings

ISSN: 1753-6561

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