Discrepancy | High call rate SNPs (98% call rate) 235,549 SNPs | Full comparison SNPs 451,279 SNPs | |||
---|---|---|---|---|---|
Type | Subjects | Genotypes (N) | % Discrepant | Genotypes (N) | % Discrepant |
Imputation | 463 | 205,962 | 25.16 | 1,864,804 | 28.82 |
Sequencing | 463 | 107,780,325 | 0.03 | 197,178,315 | 0.06 |
Inference | 495 | 116,463,033 | 0.10 | 222,926,764 | 0.20 |
Inference Families with sequence | 349 | 82,103,861 | 0.07 | 157,186,202 | 0.18 |
Inference Families without sequence | 146 | 34,359,172 | 0.18 | 65,740,562 | 0.26 |